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si:dkey-182i3.10 zinc finger protein 2 homolog [ Salmo trutta (river trout) ]

Gene ID: 115163205, updated on 17-Mar-2024

Summary

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Gene symbol
si:dkey-182i3.10
Gene description
zinc finger protein 2 homolog
See related
Ensembl:ENSSTUG00000021781
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See si:dkey-182i3.10 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 26 NC_042982.1 (14014876..14029902, complement)

Chromosome 26 - NC_042982.1Genomic Context describing neighboring genes Neighboring gene MAP/microtubule affinity-regulating kinase 4b Neighboring gene insulin-like growth factor-binding protein complex acid labile subunit Neighboring gene protein yippee-like 2 Neighboring gene huntingtin-interacting protein 1-like Neighboring gene small nucleolar RNA SNORA16B/SNORA16A family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042982.1 Chromosome 26 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042982.1 Reference fSalTru1.1 Primary Assembly

    Range
    14014876..14029902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029714904.1 → XP_029570764.1  zinc finger protein 2 homolog isoform X2

    UniProtKB/TrEMBL
    A0A673ZXA4
    Related
    ENSSTUP00000051503.1, ENSSTUT00000053852.1
    Conserved Domains (3) summary
    COG5048
    Location:328 → 606
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:360 → 380
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:596 → 621
    zf-H2C2_2; Zinc-finger double domain

  2. XM_029714903.1 → XP_029570763.1  zinc finger protein 2 homolog isoform X1

    UniProtKB/TrEMBL
    A0A673ZZU6
    Related
    ENSSTUP00000051521.1, ENSSTUT00000053871.1
    Conserved Domains (3) summary
    COG5048
    Location:328 → 606
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:360 → 380
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:596 → 621
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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