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LOC115163174 serine/arginine-rich splicing factor 7-like [ Salmo trutta (river trout) ]

Gene ID: 115163174, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115163174
Gene description
serine/arginine-rich splicing factor 7-like
See related
Ensembl:ENSSTUG00000019123
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115163174 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 26 NC_042982.1 (13463526..13468525, complement)

Chromosome 26 - NC_042982.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein L-like Neighboring gene enoyl CoA hydratase 1, peroxisomal Neighboring gene sodium/calcium exchanger 2-like Neighboring gene uncharacterized LOC115163175 Neighboring gene uncharacterized LOC115163177

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042982.1 Chromosome 26 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ASAP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor 7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042982.1 Reference fSalTru1.1 Primary Assembly

    Range
    13463526..13468525 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029714842.1 → XP_029570702.1  serine/arginine-rich splicing factor 7-like isoform X1

    UniProtKB/TrEMBL
    A0A673ZFH8
    Related
    ENSSTUP00000045430.1, ENSSTUT00000047407.1
    Conserved Domains (1) summary
    cd12373
    Location:17 → 89
    RRM_SRSF3_like; RNA recognition motif in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins

  2. XM_029714843.1 → XP_029570703.1  serine/arginine-rich splicing factor 7-like isoform X2

    UniProtKB/TrEMBL
    A0A673ZH08
    Related
    ENSSTUP00000045461.1, ENSSTUT00000047441.1

RNA

  1. XR_003869692.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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