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pomt2 protein-O-mannosyltransferase 2 [ Salmo trutta (river trout) ]

Gene ID: 115162345, updated on 17-Mar-2024

Summary

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Gene symbol
pomt2
Gene description
protein-O-mannosyltransferase 2
See related
Ensembl:ENSSTUG00000013565
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See pomt2 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
22
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 25 NC_042981.1 (28821189..28827291)

Chromosome 25 - NC_042981.1Genomic Context describing neighboring genes Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene apoptosis-resistant E3 ubiquitin protein ligase 1-like Neighboring gene latent-transforming growth factor beta-binding protein 2-like Neighboring gene protein lin-52 homolog Neighboring gene visual system homeobox 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042981.1 Chromosome 25 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042981.1 Reference fSalTru1.1 Primary Assembly

    Range
    28821189..28827291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029713554.1 → XP_029569414.1  protein O-mannosyl-transferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A673YBG7
    Related
    ENSSTUP00000031567.1, ENSSTUT00000032998.1

  2. XM_029713552.1 → XP_029569412.1  protein O-mannosyl-transferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A673YB34, A0A673YBG7
    Related
    ENSSTUP00000031659.1, ENSSTUT00000033095.1
    Conserved Domains (1) summary
    COG1928
    Location:75 → 765
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  3. XM_029713553.1 → XP_029569413.1  protein O-mannosyl-transferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A673YAX3, A0A673YBG7
    Related
    ENSSTUP00000031721.1, ENSSTUT00000033156.1
Nucleotide Protein
Heading Accession and Version

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