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LOC115161940 oocyte zinc finger protein XlCOF19-like [ Salmo trutta (river trout) ]

Gene ID: 115161940, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115161940
Gene description
oocyte zinc finger protein XlCOF19-like
See related
Ensembl:ENSSTUG00000022140
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115161940 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 25 NC_042981.1 (7440956..7444245, complement)

Chromosome 25 - NC_042981.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115162703 Neighboring gene zinc finger protein 345-like Neighboring gene myb-related transcription factor, partner of profilin-like Neighboring gene uncharacterized LOC115161942 Neighboring gene gastrula zinc finger protein XlCGF67.1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042981.1 Chromosome 25 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF19-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042981.1 Reference fSalTru1.1 Primary Assembly

    Range
    7440956..7444245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029712792.1 → XP_029568652.1  oocyte zinc finger protein XlCOF19-like

    UniProtKB/TrEMBL
    A0A673ZZJ2
    Related
    ENSSTUP00000052318.1, ENSSTUT00000054701.1
    Conserved Domains (3) summary
    COG5048
    Location:157 → 218
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:161 → 181
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:117 → 140
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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