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LOC115161837 polypeptide N-acetylgalactosaminyltransferase 16-like [ Salmo trutta (river trout) ]

Gene ID: 115161837, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115161837
Gene description
polypeptide N-acetylgalactosaminyltransferase 16-like
See related
Ensembl:ENSSTUG00000015607
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115161837 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
15
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 25 NC_042981.1 (3007522..3060374)

Chromosome 25 - NC_042981.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A-like Neighboring gene vam6/Vps39-like protein Neighboring gene cGMP-specific 3',5'-cyclic phosphodiesterase-like Neighboring gene NUMB endocytic adaptor protein Neighboring gene uncharacterized LOC115161849 Neighboring gene transfer RNA serine (anticodon UGA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042981.1 Chromosome 25 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 16-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042981.1 Reference fSalTru1.1 Primary Assembly

    Range
    3007522..3060374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029712645.1 → XP_029568505.1  polypeptide N-acetylgalactosaminyltransferase 16-like

    UniProtKB/TrEMBL
    A0A673YRG1, A0A673YS62
    Related
    ENSSTUP00000037262.1, ENSSTUT00000038930.1
    Conserved Domains (2) summary
    cd02510
    Location:135 → 429
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:445 → 556
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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