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LOC115161438 interferon a3-like [ Salmo trutta (river trout) ]

Gene ID: 115161438, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115161438
Gene description
interferon a3-like
See related
Ensembl:ENSSTUG00000027046
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
IFNd1
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Genomic context

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See LOC115161438 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 2 NC_042958.1 (67894904..67898329)

Chromosome 2 - NC_042958.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115161425 Neighboring gene chemokine (C-C motif) receptor 10 Neighboring gene CD79b molecule, immunoglobulin-associated beta Neighboring gene sodium channel, voltage-gated, type IV, alpha, a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042958.1 Chromosome 2 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmonids have an extraordinary complex type I IFN system: characterization of the IFN locus in rainbow trout oncorhynchus mykiss reveals two novel IFN subgroups. Zou J, et al. J Immunol, 2014 Sep 1. PMID 25080482
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon a3-like
Names
interferon delta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042958.1 Reference fSalTru1.1 Primary Assembly

    Range
    67894904..67898329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029712424.1 → XP_029568284.1  interferon a3-like isoform X1

    UniProtKB/TrEMBL
    A0A674ASQ6
    Related
    ENSSTUP00000062389.1, ENSSTUT00000065823.1
    Conserved Domains (1) summary
    cl00092
    Location:67 → 204
    IFab; Interferon alpha, beta. Includes also interferon omega and tau. Different from interferon gamma family. Type I interferons(alpha, beta) belong to the larger helical cytokine superfamily, which includes growth hormones, interleukins, several ...

  2. XM_029712433.1 → XP_029568293.1  interferon a3-like isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases