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LOC115161280 POU domain, class 2, transcription factor 1-like [ Salmo trutta (river trout) ]

Gene ID: 115161280, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115161280
Gene description
POU domain, class 2, transcription factor 1-like
See related
Ensembl:ENSSTUG00000013570
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115161280 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
18
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 24 NC_042980.1 (39452463..39489716, complement)

Chromosome 24 - NC_042980.1Genomic Context describing neighboring genes Neighboring gene growth hormone-regulated TBC protein 1-A-like Neighboring gene lysosome-associated membrane glycoprotein 1-like Neighboring gene high affinity immunoglobulin epsilon receptor subunit gamma-like Neighboring gene uncharacterized LOC115161284 Neighboring gene mitogen-activated protein kinase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042980.1 Chromosome 24 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
POU domain, class 2, transcription factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042980.1 Reference fSalTru1.1 Primary Assembly

    Range
    39452463..39489716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029712127.1 → XP_029567987.1  POU domain, class 2, transcription factor 1-like isoform X7

    UniProtKB/TrEMBL
    A0A673YAJ2
    Related
    ENSSTUP00000031464.1, ENSSTUT00000032895.1

  2. XM_029712129.1 → XP_029567989.1  POU domain, class 2, transcription factor 1-like isoform X9

    UniProtKB/TrEMBL
    A0A673YAQ5

  3. XM_029712128.1 → XP_029567988.1  POU domain, class 2, transcription factor 1-like isoform X8

    UniProtKB/TrEMBL
    A0A673YAJ2

  4. XM_029712125.1 → XP_029567985.1  POU domain, class 2, transcription factor 1-like isoform X5

    UniProtKB/TrEMBL
    A0A673YAM8

  5. XM_029712131.1 → XP_029567991.1  POU domain, class 2, transcription factor 1-like isoform X10

    UniProtKB/TrEMBL
    A0A673YAQ5
    Related
    ENSSTUP00000031651.1, ENSSTUT00000033086.1

  6. XM_029712122.1 → XP_029567982.1  POU domain, class 2, transcription factor 1-like isoform X2

    UniProtKB/TrEMBL
    A0A673YAG1
    Conserved Domains (3) summary
    smart00352
    Location:293 → 366
    POU; Found in Pit-Oct-Unc transcription factors
    pfam05109
    Location:457 → 585
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam00046
    Location:400 → 455
    Homeobox; Homeobox domain

  7. XM_029712124.1 → XP_029567984.1  POU domain, class 2, transcription factor 1-like isoform X4

    UniProtKB/TrEMBL
    A0A673YAG1

  8. XM_029712123.1 → XP_029567983.1  POU domain, class 2, transcription factor 1-like isoform X3

    UniProtKB/TrEMBL
    A0A673YAG1

  9. XM_029712121.1 → XP_029567981.1  POU domain, class 2, transcription factor 1-like isoform X1

    UniProtKB/TrEMBL
    A0A673YAG1
    Related
    ENSSTUP00000031541.1, ENSSTUT00000032972.1

  10. XM_029712132.1 → XP_029567992.1  POU domain, class 2, transcription factor 1-like isoform X11

    UniProtKB/TrEMBL
    A0A673YAY2

  11. XM_029712126.1 → XP_029567986.1  POU domain, class 2, transcription factor 1-like isoform X6

    UniProtKB/TrEMBL
    A0A673YAY2
    Related
    ENSSTUP00000031592.1, ENSSTUT00000033025.1
    Conserved Domains (2) summary
    smart00352
    Location:262 → 335
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:369 → 424
    Homeobox; Homeobox domain

RNA

  1. XR_003869227.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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