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LOC115160727 polypeptide N-acetylgalactosaminyltransferase 3-like [ Salmo trutta (river trout) ]

Gene ID: 115160727, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115160727
Gene description
polypeptide N-acetylgalactosaminyltransferase 3-like
See related
Ensembl:ENSSTUG00000050976
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115160727 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 24 NC_042980.1 (13658719..13679283)

Chromosome 24 - NC_042980.1Genomic Context describing neighboring genes Neighboring gene sodium channel protein type 2 subunit alpha-like Neighboring gene solute carrier family 38 member 11 Neighboring gene cysteine/serine-rich nuclear protein 3-like Neighboring gene xin actin binding repeat containing 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042980.1 Chromosome 24 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042980.1 Reference fSalTru1.1 Primary Assembly

    Range
    13658719..13679283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029711067.1 → XP_029566927.1  polypeptide N-acetylgalactosaminyltransferase 3-like

    UniProtKB/TrEMBL
    A0A674F5L1
    Related
    ENSSTUP00000115806.1, ENSSTUT00000123891.1
    Conserved Domains (2) summary
    cd02510
    Location:183 → 488
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:501 → 622
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_029711068.1 → XP_029566928.1  polypeptide N-acetylgalactosaminyltransferase 3-like

    UniProtKB/TrEMBL
    A0A674F5L1
    Related
    ENSSTUP00000115808.1, ENSSTUT00000123893.1
    Conserved Domains (2) summary
    cd02510
    Location:183 → 488
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:501 → 622
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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