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LOC115159705 exostosin-like 3 [ Salmo trutta (river trout) ]

Gene ID: 115159705, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115159705
Gene description
exostosin-like 3
See related
Ensembl:ENSSTUG00000039187
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115159705 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 1 NC_042957.1 (11091619..11142088)

Chromosome 1 - NC_042957.1Genomic Context describing neighboring genes Neighboring gene cleavage and polyadenylation specificity factor subunit 2 Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1-like Neighboring gene ribosomal oxygenase 1-like Neighboring gene synaptotagmin-14-like Neighboring gene cytosolic 5'-nucleotidase 1A-like Neighboring gene cytosolic 5'-nucleotidase 1A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042957.1 Chromosome 1 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042957.1 Reference fSalTru1.1 Primary Assembly

    Range
    11091619..11142088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029709819.1 → XP_029565679.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A674CZU8

  2. XM_029709737.1 → XP_029565597.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A674CZU8
    Related
    ENSSTUP00000089210.1, ENSSTUT00000094892.1
    Conserved Domains (3) summary
    pfam03016
    Location:184 → 498
    Exostosin; Exostosin family
    pfam09258
    Location:661 → 898
    Glyco_transf_64; Glycosyl transferase family 64 domain
    cl23720
    Location:80 → 144
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
Heading Accession and Version

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