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srsf9 serine and arginine rich splicing factor 9 [ Salmo trutta (river trout) ]

Gene ID: 115159380, updated on 17-Mar-2024

Summary

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Gene symbol
srsf9
Gene description
serine and arginine rich splicing factor 9
See related
Ensembl:ENSSTUG00000048729
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See srsf9 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 23 NC_042979.1 (12983449..12990252, complement)

Chromosome 23 - NC_042979.1Genomic Context describing neighboring genes Neighboring gene ARF GTPase-activating protein GIT2-like Neighboring gene small G protein signaling modulator 1b Neighboring gene TP53 regulated inhibitor of apoptosis 1 Neighboring gene U7 small nuclear RNA Neighboring gene reticulon-4 receptor-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042979.1 Chromosome 23 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor 9-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042979.1 Reference fSalTru1.1 Primary Assembly

    Range
    12983449..12990252 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029709038.1 → XP_029564898.1  serine/arginine-rich splicing factor 9-like

    UniProtKB/TrEMBL
    A0A674EP33
    Related
    ENSSTUP00000109740.1, ENSSTUT00000117508.1

  2. XM_029709036.1 → XP_029564896.1  serine/arginine-rich splicing factor 9-like

    UniProtKB/TrEMBL
    A0A674EP33

  3. XM_029709034.1 → XP_029564894.1  serine/arginine-rich splicing factor 9-like

    UniProtKB/TrEMBL
    A0A674EP33

  4. XM_029709032.1 → XP_029564892.1  serine/arginine-rich splicing factor 9-like

    UniProtKB/TrEMBL
    A0A674EP33
    Conserved Domains (3) summary
    cd12598
    Location:5 → 76
    RRM1_SRSF9; RNA recognition motif 1 in vertebrate serine/arginine-rich splicing factor 9 (SRSF9)
    pfam04554
    Location:206 → 251
    Extensin_2; Extensin-like region
    cl17169
    Location:112 → 186
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_029709037.1 → XP_029564897.1  serine/arginine-rich splicing factor 9-like

    UniProtKB/TrEMBL
    A0A674EP33

  6. XM_029709035.1 → XP_029564895.1  serine/arginine-rich splicing factor 9-like

    UniProtKB/TrEMBL
    A0A674EP33

  7. XM_029709033.1 → XP_029564893.1  serine/arginine-rich splicing factor 9-like

    UniProtKB/TrEMBL
    A0A674EP33

  8. XM_029709039.1 → XP_029564899.1  serine/arginine-rich splicing factor 9-like

    UniProtKB/TrEMBL
    A0A674EP33
    Conserved Domains (3) summary
    cd12598
    Location:5 → 76
    RRM1_SRSF9; RNA recognition motif 1 in vertebrate serine/arginine-rich splicing factor 9 (SRSF9)
    pfam04554
    Location:206 → 251
    Extensin_2; Extensin-like region
    cl17169
    Location:112 → 186
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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