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LOC115159220 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4-like [ Salmo trutta (river trout) ]

Gene ID: 115159220, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115159220
Gene description
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4-like
See related
Ensembl:ENSSTUG00000011160
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115159220 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 23 NC_042979.1 (8357208..8375977)

Chromosome 23 - NC_042979.1Genomic Context describing neighboring genes Neighboring gene praja ring finger ubiquitin ligase 2 Neighboring gene fer (fps/fes related) tyrosine kinase Neighboring gene uncharacterized LOC115159221 Neighboring gene soluble lamin-associated protein of 75 kDa-like Neighboring gene LIM/homeobox protein Lhx5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042979.1 Chromosome 23 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042979.1 Reference fSalTru1.1 Primary Assembly

    Range
    8357208..8375977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029708715.1 → XP_029564575.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4-like

    UniProtKB/TrEMBL
    A0A673XMX5
    Related
    ENSSTUP00000025585.1, ENSSTUT00000026814.1
    Conserved Domains (1) summary
    cl27418
    Location:125 → 393
    Branch; Core-2/I-Branching enzyme

  2. XM_029708713.1 → XP_029564573.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4-like

    UniProtKB/TrEMBL
    A0A673XMX5
    Conserved Domains (1) summary
    cl27418
    Location:125 → 393
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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