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tap2t transporter associated with antigen processing, subunit type t, teleost specific [ Salmo trutta (river trout) ]

Gene ID: 115158879, updated on 17-Mar-2024

Summary

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Gene symbol
tap2t
Gene description
transporter associated with antigen processing, subunit type t, teleost specific
See related
Ensembl:ENSSTUG00000000280
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See tap2t in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 2 NC_042958.1 (58755234..58766043, complement)

Chromosome 2 - NC_042958.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase family member 2 Neighboring gene chondroadherin Neighboring gene ciliogenesis-associated TTC17-interacting protein-like Neighboring gene solute carrier family 16 member 5a Neighboring gene potassium channel tetramerization domain containing 2 Neighboring gene gamma-tubulin complex component 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042958.1 Chromosome 2 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type oligopeptide transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
antigen peptide transporter 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042958.1 Reference fSalTru1.1 Primary Assembly

    Range
    58755234..58766043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029708296.1 → XP_029564156.1  antigen peptide transporter 2-like

    UniProtKB/TrEMBL
    A0A673VJS9, A0A673VWT0
    Related
    ENSSTUP00000000446.1, ENSSTUT00000000493.1
    Conserved Domains (1) summary
    TIGR00958
    Location:4 → 707
    3a01208; Conjugate Transporter-2 (CT2) Family protein

  2. XM_029708287.1 → XP_029564147.1  antigen peptide transporter 2-like

    UniProtKB/TrEMBL
    A0A673VJS9, A0A673VWT0
    Related
    ENSSTUP00000000449.1, ENSSTUT00000000496.1
    Conserved Domains (1) summary
    TIGR00958
    Location:4 → 707
    3a01208; Conjugate Transporter-2 (CT2) Family protein
Nucleotide Protein
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