U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

colgalt2b collagen beta(1-O)galactosyltransferase 2b [ Salmo trutta (river trout) ]

Gene ID: 115158309, updated on 17-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
colgalt2b
Gene description
collagen beta(1-O)galactosyltransferase 2b
See related
Ensembl:ENSSTUG00000036356
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
colgalt2
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 22
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 22 NC_042978.1 (19412579..19451009, complement)

Chromosome 22 - NC_042978.1Genomic Context describing neighboring genes Neighboring gene abhydrolase domain containing 17A, depalmitoylase b Neighboring gene ral guanine nucleotide dissociation stimulator-like 1 Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene ER degradation-enhancing alpha-mannosidase-like protein 3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_042978.1 Chromosome 22 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
procollagen galactosyltransferase 2-like
Names
collagen beta(1-O)galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042978.1 Reference fSalTru1.1 Primary Assembly

    Range
    19412579..19451009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029707098.1 → XP_029562958.1  procollagen galactosyltransferase 2-like

    UniProtKB/TrEMBL
    A0A674CIF3, A0A674CIG5
    Related
    ENSSTUP00000083223.1, ENSSTUT00000088520.1
    Conserved Domains (2) summary
    cd00761
    Location:49 → 175
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl01298
    Location:332 → 517
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.