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LOC115158014 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like [ Salmo trutta (river trout) ]

Gene ID: 115158014, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115158014
Gene description
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like
See related
Ensembl:ENSSTUG00000008519
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115158014 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 22 NC_042978.1 (9023153..9038252)

Chromosome 22 - NC_042978.1Genomic Context describing neighboring genes Neighboring gene LIM/homeobox protein Lhx8-like Neighboring gene choline transporter-like protein 5-B Neighboring gene transcription factor BTF3 homolog 4-like Neighboring gene zinc finger FYVE domain-containing protein 9-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042978.1 Chromosome 22 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042978.1 Reference fSalTru1.1 Primary Assembly

    Range
    9023153..9038252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029706468.1 → XP_029562328.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like isoform X3

  2. XM_029706466.1 → XP_029562326.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like isoform X1

    UniProtKB/TrEMBL
    A0A673X4I3
    Related
    ENSSTUP00000019064.1, ENSSTUT00000020049.1

  3. XM_029706467.1 → XP_029562327.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like isoform X2

    Conserved Domains (1) summary
    pfam00777
    Location:116 → 300
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_029706469.1 → XP_029562329.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5-like isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases