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LOC115156694 heparan sulfate 2-O-sulfotransferase 1-like [ Salmo trutta (river trout) ]

Gene ID: 115156694, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115156694
Gene description
heparan sulfate 2-O-sulfotransferase 1-like
See related
Ensembl:ENSSTUG00000037723
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115156694 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 21 NC_042977.1 (12170357..12197307)

Chromosome 21 - NC_042977.1Genomic Context describing neighboring genes Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene selenoprotein F-like Neighboring gene serine/threonine-protein kinase N2-like Neighboring gene transcription initiation factor IIB-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042977.1 Chromosome 21 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042977.1 Reference fSalTru1.1 Primary Assembly

    Range
    12170357..12197307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029704273.1 → XP_029560133.1  heparan sulfate 2-O-sulfotransferase 1-like

    UniProtKB/TrEMBL
    A0A674AN12, A0A674CQD8
    Related
    ENSSTUP00000085724.1, ENSSTUT00000091192.1
    Conserved Domains (1) summary
    pfam03567
    Location:74 → 322
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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