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LOC115156662 lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like [ Salmo trutta (river trout) ]

Gene ID: 115156662, updated on 2-May-2024

Summary

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Gene symbol
LOC115156662
Gene description
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like
See related
Ensembl:ENSSTUG00000049265
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115156662 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 21 NC_042977.1 (10873651..10885514)

Chromosome 21 - NC_042977.1Genomic Context describing neighboring genes Neighboring gene F-box-like/WD repeat-containing protein TBL1XR1 Neighboring gene protein DVR-1-like Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene small nucleolar RNA SNORA81 Neighboring gene small nucleolar RNA SNORD2 Neighboring gene eukaryotic translation initiation factor 4A2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042977.1 Chromosome 21 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042977.1 Reference fSalTru1.1 Primary Assembly

    Range
    10873651..10885514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029704193.1 → XP_029560053.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

    UniProtKB/TrEMBL
    A0A674EU22
    Conserved Domains (1) summary
    cl21608
    Location:104 → 308
    Galactosyl_T; Galactosyltransferase

  2. XM_029704196.1 → XP_029560056.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

    UniProtKB/TrEMBL
    A0A674EU22
    Conserved Domains (1) summary
    cl21608
    Location:104 → 308
    Galactosyl_T; Galactosyltransferase

  3. XM_029704195.1 → XP_029560055.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

    UniProtKB/TrEMBL
    A0A674EU22
    Related
    ENSSTUP00000111157.1, ENSSTUT00000118980.1

  4. XM_029704194.1 → XP_029560054.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like

    UniProtKB/TrEMBL
    A0A674EU22
Nucleotide Protein
Heading Accession and Version

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