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galnt5 polypeptide N-acetylgalactosaminyltransferase 5 [ Salmo trutta (river trout) ]

Gene ID: 115156087, updated on 21-Dec-2023

Summary

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Gene symbol
galnt5
Gene description
polypeptide N-acetylgalactosaminyltransferase 5
See related
Ensembl:ENSSTUG00000027149
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See galnt5 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 20 NC_042976.1 (41537470..41547070, complement)

Chromosome 20 - NC_042976.1Genomic Context describing neighboring genes Neighboring gene cytohesin-interacting protein-like Neighboring gene ermin Neighboring gene glycerol-3-phosphate dehydrogenase 2 Neighboring gene nuclear receptor subfamily 4 group A member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042976.1 Chromosome 20 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042976.1 Reference fSalTru1.1 Primary Assembly

    Range
    41537470..41547070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029703363.1 → XP_029559223.1  polypeptide N-acetylgalactosaminyltransferase 5

    UniProtKB/TrEMBL
    A0A674AU59, A0A674AW07
    Related
    ENSSTUP00000062651.1, ENSSTUT00000066091.1
    Conserved Domains (2) summary
    cd02510
    Location:417 → 720
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:730 → 849
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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Gene LinkOut

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