U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ifih1 interferon induced with helicase C domain 1 [ Salmo trutta (river trout) ]

Gene ID: 115156064, updated on 17-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ifih1
Gene description
interferon induced with helicase C domain 1
See related
Ensembl:ENSSTUG00000013108
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ifih1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
16
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 20 NC_042976.1 (40669839..40689277)

Chromosome 20 - NC_042976.1Genomic Context describing neighboring genes Neighboring gene fidgetin-like Neighboring gene potassium voltage-gated channel subfamily H member 7-like Neighboring gene uncharacterized LOC115156065 Neighboring gene glucagon-1-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_042976.1 Chromosome 20 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interferon-beta production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
interferon-induced helicase C domain-containing protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042976.1 Reference fSalTru1.1 Primary Assembly

    Range
    40669839..40689277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029703294.1 → XP_029559154.1  interferon-induced helicase C domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A673YJA6, A0A673YJF7
    Related
    ENSSTUP00000034572.1, ENSSTUT00000036125.1

  2. XM_029703296.1 → XP_029559156.1  interferon-induced helicase C domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A673YJF7
    Related
    ENSSTUP00000034622.1, ENSSTUT00000036176.1
    Conserved Domains (5) summary
    COG1111
    Location:304 → 858
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd08818
    Location:7 → 99
    CARD_MDA5_r1; Caspase activation and recruitment domain found in MDA5, first repeat
    cd08819
    Location:108 → 199
    CARD_MDA5_r2; Caspase activation and recruitment domain found in MDA5, second repeat
    cl13152
    Location:875 → 989
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    cl28899
    Location:307 → 521
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.