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srsf5b serine and arginine rich splicing factor 5b [ Salmo trutta (river trout) ]

Gene ID: 115155913, updated on 17-Mar-2024

Summary

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Gene symbol
srsf5b
Gene description
serine and arginine rich splicing factor 5b
See related
Ensembl:ENSSTUG00000013645
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 1 NC_042957.1 (7284467..7290565, complement)

Chromosome 1 - NC_042957.1Genomic Context describing neighboring genes Neighboring gene protein max-like Neighboring gene uncharacterized LOC115155882 Neighboring gene sodium/bile acid cotransporter-like Neighboring gene sushi domain-containing protein 6-like Neighboring gene uncharacterized LOC115200967

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042957.1 Chromosome 1 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042957.1 Reference fSalTru1.1 Primary Assembly

    Range
    7284467..7290565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029703023.1 → XP_029558883.1  serine/arginine-rich splicing factor 5-like isoform X1

    UniProtKB/TrEMBL
    A0A673YB63
    Related
    ENSSTUP00000031705.1, ENSSTUT00000033141.1
    Conserved Domains (2) summary
    cd12337
    Location:5 → 73
    RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:131 → 201
    RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

  2. XM_029703108.1 → XP_029558968.1  serine/arginine-rich splicing factor 5-like isoform X2

    UniProtKB/TrEMBL
    A0A673YB81
    Related
    ENSSTUP00000031725.1, ENSSTUT00000033161.1
Nucleotide Protein
Heading Accession and Version

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