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alg13 ALG13 UDP-N-acetylglucosaminyltransferase subunit [ Salmo trutta (river trout) ]

Gene ID: 115154874, updated on 17-Mar-2024

Summary

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Gene symbol
alg13
Gene description
ALG13 UDP-N-acetylglucosaminyltransferase subunit
See related
Ensembl:ENSSTUG00000036825
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See alg13 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
24
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 19 NC_042975.1 (48476621..48484990, complement)

Chromosome 19 - NC_042975.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ornithine transporter 1-like Neighboring gene transient receptor potential cation channel subfamily C member 5 Neighboring gene dachshund a Neighboring gene CHM Rab escort protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042975.1 Chromosome 19 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042975.1 Reference fSalTru1.1 Primary Assembly

    Range
    48476621..48484990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029701550.1 → XP_029557410.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X4

  2. XM_029701549.1 → XP_029557409.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X3

    Conserved Domains (3) summary
    cd04508
    Location:286 → 334
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    PRK10263
    Location:615 → 860
    PRK10263; DNA translocase FtsK; Provisional
    cl19932
    Location:29 → 142
    OTU; OTU-like cysteine protease

  3. XM_029701548.1 → XP_029557408.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X2

    UniProtKB/TrEMBL
    A0A674CK17
    Related
    ENSSTUP00000083819.1, ENSSTUT00000089134.1

  4. XM_029701547.1 → XP_029557407.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1

Nucleotide Protein
Heading Accession and Version

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