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LOC115154677 nuclear RNA export factor 1-like [ Salmo trutta (river trout) ]

Gene ID: 115154677, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115154677
Gene description
nuclear RNA export factor 1-like
See related
Ensembl:ENSSTUG00000023688
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115154677 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
21
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 19 NC_042975.1 (44011797..44030563)

Chromosome 19 - NC_042975.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-3-like Neighboring gene BSCL2 lipid droplet biogenesis associated, seipin Neighboring gene peroxiredoxin-5, mitochondrial-like Neighboring gene steroid hormone receptor ERR1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042975.1 Chromosome 19 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear RNA export factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042975.1 Reference fSalTru1.1 Primary Assembly

    Range
    44011797..44030563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029701151.1 → XP_029557011.1  nuclear RNA export factor 1-like isoform X1

    UniProtKB/TrEMBL
    A0A674AEA9, A0A674AEF3
    Related
    ENSSTUP00000057267.1, ENSSTUT00000060052.1

  2. XM_029701152.1 → XP_029557012.1  nuclear RNA export factor 1-like isoform X2

    UniProtKB/TrEMBL
    A0A674AHD1
    Conserved Domains (5) summary
    smart00804
    Location:538 → 600
    TAP_C; C-terminal domain of vertebrate Tap protein
    cd00780
    Location:371 → 520
    NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
    sd00035
    Location:205 → 247
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam13855
    Location:251 → 308
    LRR_8; Leucine rich repeat
    pfam09162
    Location:99 → 178
    Tap-RNA_bind; Tap, RNA-binding
Nucleotide Protein
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