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LOC115154216 dnaJ homolog subfamily B member 6-like [ Salmo trutta (river trout) ]

Gene ID: 115154216, updated on 25-Jan-2024

Summary

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Gene symbol
LOC115154216
Gene description
dnaJ homolog subfamily B member 6-like
See related
Ensembl:ENSSTUG00000012826
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115154216 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 2 NC_042958.1 (33251591..33314059, complement)

Chromosome 2 - NC_042958.1Genomic Context describing neighboring genes Neighboring gene condensin-2 complex subunit G2-like Neighboring gene receptor-type tyrosine-protein phosphatase N2-like Neighboring gene ubiquitin-protein ligase E3C-like Neighboring gene motor neuron and pancreas homeobox protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042958.1 Chromosome 2 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily B member 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042958.1 Reference fSalTru1.1 Primary Assembly

    Range
    33251591..33314059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029700235.1 → XP_029556095.1  dnaJ homolog subfamily B member 6-like isoform X2

    Conserved Domains (1) summary
    PRK10767
    Location:4 → 131
    PRK10767; chaperone protein DnaJ; Provisional

  2. XM_029700220.1 → XP_029556080.1  dnaJ homolog subfamily B member 6-like isoform X1

    UniProtKB/TrEMBL
    A0A673Y5B3

  3. XM_029700226.1 → XP_029556086.1  dnaJ homolog subfamily B member 6-like isoform X1

    UniProtKB/TrEMBL
    A0A673Y5B3
    Related
    ENSSTUP00000029700.1, ENSSTUT00000031076.1

  4. XM_029700254.1 → XP_029556114.1  dnaJ homolog subfamily B member 6-like isoform X4

  5. XM_029700245.1 → XP_029556105.1  dnaJ homolog subfamily B member 6-like isoform X3

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases