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pou2f3 POU class 2 homeobox 3 [ Salmo trutta (river trout) ]

Gene ID: 115154089, updated on 21-Dec-2023

Summary

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Gene symbol
pou2f3
Gene description
POU class 2 homeobox 3
See related
Ensembl:ENSSTUG00000039049
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See pou2f3 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
13
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 19 NC_042975.1 (18524598..18537298, complement)

Chromosome 19 - NC_042975.1Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor (GEF) 12b Neighboring gene TLC domain containing 5b Neighboring gene out at first protein homolog Neighboring gene phosphodiesterase 9ab

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042975.1 Chromosome 19 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
POU domain, class 2, transcription factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042975.1 Reference fSalTru1.1 Primary Assembly

    Range
    18524598..18537298 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029699956.1 → XP_029555816.1  POU domain, class 2, transcription factor 3

    UniProtKB/TrEMBL
    A0A674CYS0
    Related
    ENSSTUP00000088852.1, ENSSTUT00000094523.1
    Conserved Domains (2) summary
    smart00352
    Location:162 → 236
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:262 → 316
    Homeobox; Homeobox domain

  2. XM_029699955.1 → XP_029555815.1  POU domain, class 2, transcription factor 3

    UniProtKB/TrEMBL
    A0A674CYS0
    Conserved Domains (2) summary
    smart00352
    Location:162 → 236
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:262 → 316
    Homeobox; Homeobox domain
Nucleotide Protein
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