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LOC115152118 interferon regulatory factor 7-like [ Salmo trutta (river trout) ]

Gene ID: 115152118, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115152118
Gene description
interferon regulatory factor 7-like
See related
Ensembl:ENSSTUG00000042851
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
IRF7
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Genomic context

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See LOC115152118 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 17 NC_042973.1 (35254403..35264080, complement)

Chromosome 17 - NC_042973.1Genomic Context describing neighboring genes Neighboring gene ras association domain-containing protein 8-like Neighboring gene PHD and ring finger domains 1 Neighboring gene achaete-scute homolog 1b-like Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042973.1 Chromosome 17 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon regulatory factor 7-like
Names
interferon regulatory factor 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042973.1 Reference fSalTru1.1 Primary Assembly

    Range
    35254403..35264080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029696654.1 → XP_029552514.1  interferon regulatory factor 7-like

    UniProtKB/TrEMBL
    A0A674DHK9
    Related
    ENSSTUP00000095370.1, ENSSTUT00000102384.1
    Conserved Domains (2) summary
    pfam00605
    Location:7 → 104
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:202 → 374
    IRF-3; Interferon-regulatory factor 3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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