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LOC115151844 zinc finger protein 260-like [ Salmo trutta (river trout) ]

Gene ID: 115151844, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115151844
Gene description
zinc finger protein 260-like
See related
Ensembl:ENSSTUG00000005341
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115151844 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 17 NC_042973.1 (22039357..22043360, complement)

Chromosome 17 - NC_042973.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated proteins 1A/1B light chain 3B Neighboring gene zinc finger CCHC domain-containing protein 14-like Neighboring gene junctophilin 3b Neighboring gene large neutral amino acids transporter small subunit 1-like Neighboring gene carbonic anhydrase 5B, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042973.1 Chromosome 17 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 260-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042973.1 Reference fSalTru1.1 Primary Assembly

    Range
    22039357..22043360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029696134.1 → XP_029551994.1  zinc finger protein 260-like

    UniProtKB/TrEMBL
    A0A673WQ09
    Related
    ENSSTUP00000011198.1, ENSSTUT00000011883.1
    Conserved Domains (3) summary
    COG5048
    Location:432 → 738
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:436 → 456
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:404 → 426
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
Heading Accession and Version

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