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p3h2 prolyl 3-hydroxylase 2 [ Salmo trutta (river trout) ]

Gene ID: 115151549, updated on 17-Mar-2024

Summary

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Gene symbol
p3h2
Gene description
prolyl 3-hydroxylase 2
See related
Ensembl:ENSSTUG00000036782
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See p3h2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
15
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 17 NC_042973.1 (10031354..10146510)

Chromosome 17 - NC_042973.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115151547 Neighboring gene claudin-1-like Neighboring gene uncharacterized LOC115151550 Neighboring gene coiled-coil domain-containing protein 181-like Neighboring gene coproporphyrinogen oxidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042973.1 Chromosome 17 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042973.1 Reference fSalTru1.1 Primary Assembly

    Range
    10031354..10146510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029695581.1 → XP_029551441.1  prolyl 3-hydroxylase 2-like

    UniProtKB/TrEMBL
    A0A674CMI4, A0A674CNE8
    Related
    ENSSTUP00000084985.1, ENSSTUT00000090394.1
    Conserved Domains (1) summary
    smart00702
    Location:449 → 645
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

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