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LOC115150347 aspartyl/asparaginyl beta-hydroxylase-like [ Salmo trutta (river trout) ]

Gene ID: 115150347, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115150347
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
See related
Ensembl:ENSSTUG00000024035
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115150347 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
26
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 2 NC_042958.1 (10372453..10422581)

Chromosome 2 - NC_042958.1Genomic Context describing neighboring genes Neighboring gene sodium channel protein type 4 subunit alpha B-like Neighboring gene WD repeat-containing protein 48-like Neighboring gene clavesin-1-like Neighboring gene polymeric immunoglobulin receptor-like Neighboring gene RIO kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042958.1 Chromosome 2 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042958.1 Reference fSalTru1.1 Primary Assembly

    Range
    10372453..10422581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029693594.1 → XP_029549454.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X7

  2. XM_029693543.1 → XP_029549403.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

    UniProtKB/TrEMBL
    A0A674AQX7

  3. XM_029693552.1 → XP_029549412.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

    UniProtKB/TrEMBL
    A0A674AQX7
    Conserved Domains (4) summary
    pfam05279
    Location:37 → 303
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:304 → 533
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:406 → 432
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:575 → 729
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  4. XM_029693576.1 → XP_029549436.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X5

    UniProtKB/TrEMBL
    A0A674ANV5

  5. XM_029693568.1 → XP_029549428.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

    UniProtKB/TrEMBL
    A0A674ANV5
    Related
    ENSSTUP00000060720.1, ENSSTUT00000064044.1

  6. XM_029693586.1 → XP_029549446.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X6

    UniProtKB/TrEMBL
    A0A674AR73
    Related
    ENSSTUP00000060911.1, ENSSTUT00000064267.1

  7. XM_029693561.1 → XP_029549421.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

    UniProtKB/TrEMBL
    A0A674AN14, A0A674AQX7
    Related
    ENSSTUP00000060683.1, ENSSTUT00000063998.1
Nucleotide Protein
Heading Accession and Version

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