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LOC115148969 acetylcholine receptor subunit gamma-like [ Salmo trutta (river trout) ]

Gene ID: 115148969, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115148969
Gene description
acetylcholine receptor subunit gamma-like
See related
Ensembl:ENSSTUG00000045386
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115148969 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 15 NC_042971.1 (38477361..38486450, complement)

Chromosome 15 - NC_042971.1Genomic Context describing neighboring genes Neighboring gene misshapen-like kinase 1 Neighboring gene phospholipase D2-like Neighboring gene sodium/potassium-transporting ATPase subunit beta-2-like Neighboring gene neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1-like Neighboring gene diacylglycerol O-acyltransferase 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042971.1 Chromosome 15 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit gamma-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042971.1 Reference fSalTru1.1 Primary Assembly

    Range
    38477361..38486450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029691333.1 → XP_029547193.1  acetylcholine receptor subunit gamma-like isoform X2

    UniProtKB/TrEMBL
    A0A674E217, A0A674E2P7
    Related
    ENSSTUP00000102033.1, ENSSTUT00000109430.1
    Conserved Domains (2) summary
    cd19029
    Location:52 → 246
    LGIC_ECD_nAChR_G; extracellular domain of nicotinic acetylcholine receptor subunit gamma (CHRNG)
    pfam02932
    Location:253 → 495
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  2. XM_029691332.1 → XP_029547192.1  acetylcholine receptor subunit gamma-like isoform X1

    UniProtKB/TrEMBL
    A0A674E2R4
    Related
    ENSSTUP00000102134.1, ENSSTUT00000109546.1
Nucleotide Protein
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