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LOC115148613 HLA class II histocompatibility antigen, DQ beta 1 chain-like [ Salmo trutta (river trout) ]

Gene ID: 115148613, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115148613
Gene description
HLA class II histocompatibility antigen, DQ beta 1 chain-like
See related
Ensembl:ENSSTUG00000009777
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115148613 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 15 NC_042971.1 (21322740..21326263, complement)

Chromosome 15 - NC_042971.1Genomic Context describing neighboring genes Neighboring gene neurogranin (protein kinase C substrate, RC3) a Neighboring gene TIP41-like protein Neighboring gene H-2 class II histocompatibility antigen, A-Q alpha chain-like Neighboring gene tubulin-specific chaperone cofactor E-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042971.1 Chromosome 15 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC class II protein complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of exogenous peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immunoglobulin production involved in immunoglobulin-mediated immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide antigen assembly with MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HLA class II histocompatibility antigen, DQ beta 1 chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042971.1 Reference fSalTru1.1 Primary Assembly

    Range
    21322740..21326263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029690658.1 → XP_029546518.1  HLA class II histocompatibility antigen, DQ beta 1 chain-like

    UniProtKB/TrEMBL
    A0A673XDB0
    Related
    ENSSTUP00000022179.1, ENSSTUT00000023291.1
    Conserved Domains (2) summary
    cl03042
    Location:36 → 103
    MHC_II_beta; Class II histocompatibility antigen, beta domain
    cl11960
    Location:119 → 209
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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