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LOC115148587 kin of IRRE-like protein 3 [ Salmo trutta (river trout) ]

Gene ID: 115148587, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115148587
Gene description
kin of IRRE-like protein 3
See related
Ensembl:ENSSTUG00000007047
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115148587 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
17
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 15 NC_042971.1 (18408074..18720317, complement)

Chromosome 15 - NC_042971.1Genomic Context describing neighboring genes Neighboring gene protein Aster-B-like Neighboring gene CXADR-like membrane protein Neighboring gene zinc finger protein 184-like Neighboring gene potassium inwardly rectifying channel subfamily J member 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042971.1 Chromosome 15 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042971.1 Reference fSalTru1.1 Primary Assembly

    Range
    18408074..18720317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029690610.1 → XP_029546470.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A673WUZ6, A0A673X3H1
    Related
    ENSSTUP00000015869.1, ENSSTUT00000016738.1

  2. XM_029690611.1 → XP_029546471.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A673X3H1
    Related
    ENSSTUP00000015944.1, ENSSTUT00000016813.1
    Conserved Domains (4) summary
    cd05759
    Location:89 → 170
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:342 → 439
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    TIGR00864
    Location:173 → 302
    PCC; polycystin cation channel protein
    cl11960
    Location:259 → 340
    Ig; Immunoglobulin domain
Nucleotide Protein
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