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LOC115147927 zinc finger protein 180-like [ Salmo trutta (river trout) ]

Gene ID: 115147927, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115147927
Gene description
zinc finger protein 180-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115147927 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 14 NC_042970.1 (77501118..77510255, complement)

Chromosome 14 - NC_042970.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 721-like Neighboring gene zinc finger protein 883-like Neighboring gene zinc finger protein 850-like Neighboring gene zinc finger protein 180-like Neighboring gene zinc finger protein 436-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042970.1 Chromosome 14 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 180-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042970.1 Reference fSalTru1.1 Primary Assembly

    Range
    77501118..77510255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029690174.1 → XP_029546034.1  zinc finger protein 180-like

    Conserved Domains (3) summary
    COG5048
    Location:21 → 325
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:109 → 129
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:317 → 342
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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