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LOC115147703 zinc finger protein 239-like [ Salmo trutta (river trout) ]

Gene ID: 115147703, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115147703
Gene description
zinc finger protein 239-like
See related
Ensembl:ENSSTUG00000006233
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115147703 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 14 NC_042970.1 (83333176..83367765)

Chromosome 14 - NC_042970.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115147707 Neighboring gene myosin heavy chain, fast skeletal muscle-like Neighboring gene myosin heavy chain, fast skeletal muscle-like Neighboring gene myosin heavy chain, fast skeletal muscle-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042970.1 Chromosome 14 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC115147703; zinc finger protein 239-like; zinc finger protein 436-like; zinc finger protein 664-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042970.1 Reference fSalTru1.1 Primary Assembly

    Range
    83333176..83367765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029690002.1 → XP_029545862.1  zinc finger protein 436-like isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:225 → 504
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:342 → 362
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_029690005.1 → XP_029545865.1  zinc finger protein 436-like isoform X3

    UniProtKB/TrEMBL
    A0A673WZ18
    Related
    ENSSTUP00000013396.1, ENSSTUT00000014159.1
    Conserved Domains (3) summary
    COG5048
    Location:175 → 253
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:191 → 211
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:315 → 339
    zf-H2C2_2; Zinc-finger double domain

  3. XM_029690008.1 → XP_029545868.1  uncharacterized protein LOC115147703 isoform X5

  4. XM_029690003.1 → XP_029545863.1  zinc finger protein 664-like isoform X2

    UniProtKB/TrEMBL
    A0A673WN24
    Related
    ENSSTUP00000013415.1, ENSSTUT00000014179.1

  5. XM_029690007.1 → XP_029545867.1  zinc finger protein 239-like isoform X4

  6. XM_029690004.1 → XP_029545864.1  zinc finger protein 436-like isoform X3

    UniProtKB/TrEMBL
    A0A673WZ18

  7. XM_029690006.1 → XP_029545866.1  zinc finger protein 436-like isoform X3

    UniProtKB/TrEMBL
    A0A673WZ18
    Conserved Domains (3) summary
    COG5048
    Location:175 → 253
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:191 → 211
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:315 → 339
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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