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LOC115147540 rano class II histocompatibility antigen, B alpha chain-like [ Salmo trutta (river trout) ]

Gene ID: 115147540, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115147540
Gene description
rano class II histocompatibility antigen, B alpha chain-like
See related
Ensembl:ENSSTUG00000037834
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115147540 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 14 NC_042970.1 (79981941..79984210, complement)

Chromosome 14 - NC_042970.1Genomic Context describing neighboring genes Neighboring gene LIM domain-binding protein 1 Neighboring gene uncharacterized LOC115147538 Neighboring gene rano class II histocompatibility antigen, A beta chain-like Neighboring gene peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like Neighboring gene protein O-GlcNAcase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042970.1 Chromosome 14 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC class II protein complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of exogenous peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immunoglobulin production involved in immunoglobulin-mediated immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide antigen assembly with MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
H-2 class II histocompatibility antigen, A-Q alpha chain-like; rano class II histocompatibility antigen, B alpha chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042970.1 Reference fSalTru1.1 Primary Assembly

    Range
    79981941..79984210 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029689771.1 → XP_029545631.1  H-2 class II histocompatibility antigen, A-Q alpha chain-like isoform X1

    UniProtKB/TrEMBL
    A0A674CRZ7
    Related
    ENSSTUP00000085951.1, ENSSTUT00000091450.1
    Conserved Domains (1) summary
    cl11960
    Location:102 → 195
    Ig; Immunoglobulin domain

  2. XM_029689772.1 → XP_029545632.1  rano class II histocompatibility antigen, B alpha chain-like isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases