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LOC115146439 mitochondrial basic amino acids transporter [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115146439, updated on 8-May-2024

Summary

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Gene symbol
LOC115146439
Gene description
mitochondrial basic amino acids transporter
See related
EnsemblRapid:ENSONEG00000003619
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115146439 in Genome Data Viewer
Location:
chromosome: LG18
Exon count:
5
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG18 NC_088413.1 (74282937..74299752, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG18 NC_042552.1 (42090772..42105093, complement)

Linkage Group LG18 - NC_088413.1Genomic Context describing neighboring genes Neighboring gene doublecortin domain-containing protein 2-like Neighboring gene heme-binding protein soul3 Neighboring gene solute carrier family 25 member 47b Neighboring gene tryptophanyl-tRNA synthetase 1 Neighboring gene WD repeat-containing protein 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-affinity L-arginine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial basic amino acids transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088413.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    74282937..74299752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029688508.2 → XP_029544368.1  mitochondrial basic amino acids transporter

    Related
    ENSONEP00000007555.1
    Conserved Domains (1) summary
    pfam00153
    Location:93 → 186
    Mito_carr; Mitochondrial carrier protein

RNA

  1. XR_010459799.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases