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cdc5l CDC5 cell division cycle 5-like (S. pombe) [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115146128, updated on 8-May-2024

Summary

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Gene symbol
cdc5l
Gene description
CDC5 cell division cycle 5-like (S. pombe)
See related
EnsemblRapid:ENSONEG00000020458
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See cdc5l in Genome Data Viewer
Location:
chromosome: LG18
Exon count:
19
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG18 NC_088413.1 (54867683..54886016, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG18 NC_042552.1 (27414488..27432853, complement)

Linkage Group LG18 - NC_088413.1Genomic Context describing neighboring genes Neighboring gene XK-related protein 6-like Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 4 Neighboring gene beta-soluble NSF attachment protein-like Neighboring gene minichromosome maintenance 8 homologous recombination repair factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell division cycle 5-like protein
Names
cell division cycle 5 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088413.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    54867683..54886016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029687962.2 → XP_029543822.1  cell division cycle 5-like protein

    Related
    ENSONEP00000046923.1
    Conserved Domains (2) summary
    COG5147
    Location:6 → 317
    REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
    pfam11831
    Location:406 → 658
    Myb_Cef; pre-mRNA splicing factor component
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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