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LOC115143437 cytokine-inducible SH2-containing protein-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115143437, updated on 8-May-2024

Summary

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Gene symbol
LOC115143437
Gene description
cytokine-inducible SH2-containing protein-like
See related
EnsemblRapid:ENSONEG00000022590
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115143437 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
7
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG15 NC_088410.1 (85691450..85697748)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG15 NC_042549.1 (51151192..51157466)

Linkage Group LG15 - NC_088410.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein 82-B-like Neighboring gene F-box/WD repeat-containing protein 7-like Neighboring gene twinfilin-2-like Neighboring gene MTRF1L release factor glutamine methyltransferase-like Neighboring gene NPR2 like, GATOR1 complex subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokine-inducible SH2-containing protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088410.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    85691450..85697748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029683874.2 → XP_029539734.1  cytokine-inducible SH2-containing protein-like isoform X1

  2. XM_029683878.1 → XP_029539738.1  cytokine-inducible SH2-containing protein-like isoform X3

  3. XM_029683876.2 → XP_029539736.1  cytokine-inducible SH2-containing protein-like isoform X3

  4. XM_065001981.1 → XP_064858053.1  cytokine-inducible SH2-containing protein-like isoform X3

  5. XM_029683877.2 → XP_029539737.1  cytokine-inducible SH2-containing protein-like isoform X3

    Conserved Domains (2) summary
    smart00969
    Location:166 → 199
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    cd10718
    Location:35 → 122
    SH2_CIS; Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

  6. XM_029683875.2 → XP_029539735.1  cytokine-inducible SH2-containing protein-like isoform X2

    Related
    ENSONEP00000049788.1
Nucleotide Protein
Heading Accession and Version

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