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LOC115141706 zinc finger and BTB domain-containing protein 44-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115141706, updated on 9-May-2024

Summary

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Gene symbol
LOC115141706
Gene description
zinc finger and BTB domain-containing protein 44-like
See related
EnsemblRapid:ENSONEG00000017572
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115141706 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) Unplaced Scaffold NW_027040483.1 (75767..97540)
100 previous assembly Oner_1.0 (GCF_006149115.1) Linkage Group LG14 NC_042548.1 (35420545..35442356)

NW_027040483.1Genomic Context describing neighboring genes Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 15 Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 8 Neighboring gene POU class 2 homeobox associating-factor 2 Neighboring gene lnc RNA pou2af1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 44-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NW_027040483.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    75767..97540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029680848.2 → XP_029536708.1  zinc finger and BTB domain-containing protein 44-like

    Related
    ENSONEP00000037893.1
    Conserved Domains (6) summary
    COG5189
    Location:301 → 451
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:403 → 423
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:491 → 513
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:401 → 423
    zf-C2H2; Zinc finger, C2H2 type
    cl38908
    Location:13 → 130
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam13465
    Location:415 → 440
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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Gene LinkOut

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