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LOC115140262 secreted frizzled-related protein 1-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115140262, updated on 9-May-2024

Summary

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Gene symbol
LOC115140262
Gene description
secreted frizzled-related protein 1-like
See related
EnsemblRapid:ENSONEG00000010062
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115140262 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
3
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG13 NC_088408.1 (82275480..82301245, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG13 NC_042547.1 (59996222..60021987, complement)

Linkage Group LG13 - NC_088408.1Genomic Context describing neighboring genes Neighboring gene transcriptional and immune response regulator-like Neighboring gene zinc finger matrin-type protein 4-like Neighboring gene lysyl oxidase homolog 2B Neighboring gene lysosomal membrane ascorbate-dependent ferrireductase CYB561A3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secreted frizzled-related protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088408.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    82275480..82301245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029678517.2 → XP_029534377.1  secreted frizzled-related protein 1-like

    Related
    ENSONEP00000021044.1
    Conserved Domains (2) summary
    cd03580
    Location:178 → 302
    NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
    cl02447
    Location:46 → 169
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
Nucleotide Protein
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