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pde9ac phosphodiesterase 9ac [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115137125, updated on 9-May-2024

Summary

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Gene symbol
pde9ac
Gene description
phosphodiesterase 9ac
See related
EnsemblRapid:ENSONEG00000009869
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See pde9ac in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
12
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG11 NC_088406.1 (52690129..52697122, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG11 NC_042545.1 (26552131..26565689, complement)

Linkage Group LG11 - NC_088406.1Genomic Context describing neighboring genes Neighboring gene TLC domain-containing protein 5-like Neighboring gene TLC domain-containing protein 5-like Neighboring gene OAF homolog a (Drosophila) Neighboring gene hepatic and glial cell adhesion molecule a Neighboring gene sperm autoantigenic protein 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088406.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    52690129..52697122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065024646.1 → XP_064880718.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases