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LOC115137000 adapter molecule crk-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115137000, updated on 9-May-2024

Summary

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Gene symbol
LOC115137000
Gene description
adapter molecule crk-like
See related
EnsemblRapid:ENSONEG00000029952
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115137000 in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
3
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG11 NC_088406.1 (46953258..46960480, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG11 NC_042545.1 (20903187..20911036, complement)

Linkage Group LG11 - NC_088406.1Genomic Context describing neighboring genes Neighboring gene unconventional myosin-Ic-like Neighboring gene 14-3-3 protein epsilon-like Neighboring gene leucine-rich repeat-containing protein 75A-like Neighboring gene polymerase delta-interacting protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
adapter molecule crk-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088406.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    46953258..46960480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029672960.2 → XP_029528820.1  adapter molecule crk-like

    Related
    ENSONEP00000066632.1
    Conserved Domains (3) summary
    cd09926
    Location:5 → 115
    SH2_CRK_like; Src homology 2 domain found in cancer-related signaling adaptor protein CRK
    cd11758
    Location:136 → 190
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cd11759
    Location:241 → 297
    SH3_CRK_C; C-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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