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alg13 ALG13 UDP-N-acetylglucosaminyltransferase subunit [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115135472, updated on 8-May-2024

Summary

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Gene symbol
alg13
Gene description
ALG13 UDP-N-acetylglucosaminyltransferase subunit
See related
EnsemblRapid:ENSONEG00000019661
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See alg13 in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
24
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG10 NC_088405.1 (50402187..50410349)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG10 NC_042544.1 (31398757..31406988)

Linkage Group LG10 - NC_088405.1Genomic Context describing neighboring genes Neighboring gene CHM Rab escort protein Neighboring gene dachshund a Neighboring gene short transient receptor potential channel 5-like Neighboring gene mitochondrial ornithine transporter 1-like Neighboring gene protein EOLA1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088405.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    50402187..50410349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029670185.2 → XP_029526045.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1

  2. XM_029670187.2 → XP_029526047.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X3

  3. XM_029670188.2 → XP_029526048.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X4

    Conserved Domains (2) summary
    cd04508
    Location:286 → 334
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:29 → 142
    OTU; OTU-like cysteine protease

  4. XM_029670186.2 → XP_029526046.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X2

  5. XM_029670189.2 → XP_029526049.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X5

  6. XM_029670190.2 → XP_029526050.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X6

    Related
    ENSONEP00000042861.1
    Conserved Domains (2) summary
    cd04508
    Location:286 → 334
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:29 → 142
    OTU; OTU-like cysteine protease
Nucleotide Protein
Heading Accession and Version

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