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unm_hu7910 un-named hu7910 [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115130185, updated on 8-May-2024

Summary

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Gene symbol
unm_hu7910
Gene description
un-named hu7910
See related
EnsemblRapid:ENSONEG00000034174
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See unm_hu7910 in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
26
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG6 NC_088401.1 (22635673..22676933, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG6 NC_042540.1 (6146712..6186786, complement)

Linkage Group LG6 - NC_088401.1Genomic Context describing neighboring genes Neighboring gene regulator of MON1-CCZ1 complex-like Neighboring gene serine/threonine-protein kinase RIO3-like Neighboring gene clavesin-1-like Neighboring gene WD repeat-containing protein 48 Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene sodium channel, voltage gated, type V-like, alpha b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase; uncharacterized abhydrolase domain-containing protein DDB_G0269086

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088401.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    22635673..22676933 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065019393.1 → XP_064875465.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

  2. XM_065019396.1 → XP_064875468.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

  3. XM_065019397.1 → XP_064875469.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

  4. XM_065019398.1 → XP_064875470.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

  5. XM_029661052.2 → XP_029516912.1  aspartyl/asparaginyl beta-hydroxylase isoform X13

  6. XM_065019387.1 → XP_064875459.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X2

  7. XM_065019391.1 → XP_064875463.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X6

  8. XM_065019388.1 → XP_064875460.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X3

  9. XM_065019386.1 → XP_064875458.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X1

  10. XM_065019390.1 → XP_064875462.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X5

  11. XM_065019389.1 → XP_064875461.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X4

  12. XM_065019392.1 → XP_064875464.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X7

  13. XM_065019394.1 → XP_064875466.1  uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X9

Nucleotide Protein
Heading Accession and Version

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