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LOC115115434 acetylcholine receptor subunit alpha-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115115434, updated on 9-May-2024

Summary

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Gene symbol
LOC115115434
Gene description
acetylcholine receptor subunit alpha-like
See related
EnsemblRapid:ENSONEG00000027328
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115115434 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
9
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG3 NC_088398.1 (46132223..46138510, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG3 NC_042537.1 (36299493..36305778, complement)

Linkage Group LG3 - NC_088398.1Genomic Context describing neighboring genes Neighboring gene lysosomal cholesterol signaling protein-like Neighboring gene transcription factor Sp9-like Neighboring gene secernin-3-like Neighboring gene N-chimaerin-like Neighboring gene activating transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit alpha-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088398.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    46132223..46138510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029643921.2 → XP_029499781.1  acetylcholine receptor subunit alpha-like

    Related
    ENSONEP00000060647.1
    Conserved Domains (2) summary
    TIGR00860
    Location:4 → 447
    LIC; Cation transporter family protein
    cd19014
    Location:22 → 231
    LGIC_ECD_nAChR_A1; extracellular domain of nicotinic acetylcholine receptor subunit alpha 1 (CHRNA1)
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases