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LOC115112411 anoctamin-5-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115112411, updated on 8-May-2024

Summary

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Gene symbol
LOC115112411
Gene description
anoctamin-5-like
See related
EnsemblRapid:ENSONEG00000003982
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115112411 in Genome Data Viewer
Location:
chromosome: LG27
Exon count:
20
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG27 NC_088422.1 (75004436..75031512)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG27 NC_042561.1 (59385780..59410211)

Linkage Group LG27 - NC_088422.1Genomic Context describing neighboring genes Neighboring gene anoctamin-9-like Neighboring gene U5 small nuclear ribonucleoprotein TSSC4-like Neighboring gene vesicular glutamate transporter 2.1 Neighboring gene growth arrest-specific protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088422.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    75004436..75031512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029639459.2 → XP_029495319.1  anoctamin-5-like

    Related
    ENSONEP00000009339.1
    Conserved Domains (2) summary
    pfam04547
    Location:281 → 867
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:61 → 278
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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Gene LinkOut

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