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sult1st6 sulfotransferase family 1, cytosolic sulfotransferase 6 [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115106721, updated on 8-May-2024

Summary

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Gene symbol
sult1st6
Gene description
sulfotransferase family 1, cytosolic sulfotransferase 6
See related
EnsemblRapid:ENSONEG00000032261
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
sult1a4
Orthologs
zebrafish all
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Genomic context

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See sult1st6 in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
7
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG23 NC_088418.1 (31430051..31461329)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG23 NC_042557.1 (19531777..19562948)

Linkage Group LG23 - NC_088418.1Genomic Context describing neighboring genes Neighboring gene progestin and adipoQ receptor family member 4-like Neighboring gene pelota mRNA surveillance and ribosome rescue factor Neighboring gene U5 small nuclear ribonucleoprotein 40 kDa protein-like Neighboring gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like Neighboring gene protein phosphatase 1, catalytic subunit, alpha isozyme b Neighboring gene tectonic-3 Neighboring gene mitochondrial tRNA translation optimization 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sulfation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sulfotransferase 1C2
Names
sulfotransferase family 1A member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088418.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    31430051..31461329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029629727.2 → XP_029485587.1  sulfotransferase 1C2

    Related
    ENSONEP00000072184.1
    Conserved Domains (1) summary
    pfam00685
    Location:51 → 300
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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