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LOC115105592 gamma-sarcoglycan-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115105592, updated on 8-May-2024

Summary

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Gene symbol
LOC115105592
Gene description
gamma-sarcoglycan-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115105592 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
7
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG22 NC_088417.1 (71090879..71098663, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG22 NC_042556.1 (56025170..56027563, complement)

Linkage Group LG22 - NC_088417.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135563815 Neighboring gene mitochondrial intermediate peptidase b Neighboring gene tumor necrosis factor receptor superfamily member 19-like Neighboring gene glucose-6-phosphate exchanger SLC37A4-like Neighboring gene nuclear pore complex protein Nup98-Nup96-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088417.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    71090879..71098663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029627798.2 → XP_029483658.2  gamma-sarcoglycan-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases