U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC115105185 chondroitin sulfate glucuronyltransferase-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115105185, updated on 8-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC115105185
Gene description
chondroitin sulfate glucuronyltransferase-like
See related
EnsemblRapid:ENSONEG00000020950
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC115105185 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
4
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG22 NC_088417.1 (41573949..41597475, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG22 NC_042556.1 (27015471..27038991, complement)

Linkage Group LG22 - NC_088417.1Genomic Context describing neighboring genes Neighboring gene transcriptional repressor NF-X1-like Neighboring gene SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 Neighboring gene uncharacterized LOC115105187 Neighboring gene anion exchange protein 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
chondroitin sulfate glucuronyltransferase-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088417.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    41573949..41597475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029626890.2 → XP_029482750.1  chondroitin sulfate glucuronyltransferase-like

    Related
    ENSONEP00000045793.1
    Conserved Domains (1) summary
    pfam05679
    Location:247 → 750
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases