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LOC115103726 protein C-mannosyl-transferase DPY19L1-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115103726, updated on 8-May-2024

Summary

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Gene symbol
LOC115103726
Gene description
protein C-mannosyl-transferase DPY19L1-like
See related
EnsemblRapid:ENSONEG00000007476
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115103726 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
22
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG3 NC_088398.1 (19413961..19427772)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG3 NC_042537.1 (9129914..9143244)

Linkage Group LG3 - NC_088398.1Genomic Context describing neighboring genes Neighboring gene PR domain zinc finger protein 1-like Neighboring gene T-box transcription factor TBX20 Neighboring gene uncharacterized LOC115103733 Neighboring gene fucolectin-6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein C-mannosyl-transferase DPY19L1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088398.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    19413961..19427772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029624621.2 → XP_029480481.1  protein C-mannosyl-transferase DPY19L1-like

    Related
    ENSONEP00000018020.1
    Conserved Domains (1) summary
    pfam10034
    Location:84 → 737
    Dpy19; Q-cell neuroblast polarisation
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases