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LOC115103174 aspartyl/asparaginyl beta-hydroxylase-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115103174, updated on 8-May-2024

Summary

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Gene symbol
LOC115103174
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115103174 in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
15
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG20 NC_088415.1 (79057192..79085355, complement)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG20 NC_042554.1 (60953210..60978942, complement)

Linkage Group LG20 - NC_088415.1Genomic Context describing neighboring genes Neighboring gene ras-related protein Rab-2A Neighboring gene chromodomain-helicase-DNA-binding protein 7-like Neighboring gene xenotropic and polytropic retrovirus receptor 1 homolog Neighboring gene tocopherol (alpha) transfer protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088415.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    79057192..79085355 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065005814.1 → XP_064861886.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

  2. XM_065005815.1 → XP_064861887.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

  3. XM_065005816.1 → XP_064861888.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X5

  4. XM_065005813.1 → XP_064861885.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

  5. XM_065005812.1 → XP_064861884.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

  6. XM_065005817.1 → XP_064861889.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X6

RNA

  1. XR_010460236.1 RNA Sequence

  2. XR_010460235.1 RNA Sequence

  3. XR_010460234.1 RNA Sequence

Nucleotide Protein
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