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LOC115102143 polypeptide N-acetylgalactosaminyltransferase 6-like [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115102143, updated on 9-May-2024

Summary

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Gene symbol
LOC115102143
Gene description
polypeptide N-acetylgalactosaminyltransferase 6-like
See related
EnsemblRapid:ENSONEG00000007170
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC115102143 in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
12
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG20 NC_088415.1 (25839292..25845155)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG20 NC_042554.1 (10006302..10012166)

Linkage Group LG20 - NC_088415.1Genomic Context describing neighboring genes Neighboring gene adenylate cyclase type 6-like Neighboring gene sperm microtubule inner protein 11-like Neighboring gene glucose-6-phosphate 1-dehydrogenase-like Neighboring gene glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088415.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    25839292..25845155
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029621761.2 → XP_029477621.1  polypeptide N-acetylgalactosaminyltransferase 6-like isoform X2

    Related
    ENSONEP00000014680.1

  2. XM_029621758.2 → XP_029477618.1  polypeptide N-acetylgalactosaminyltransferase 6-like isoform X1

    Related
    ENSONEP00000014675.1

  3. XM_065005337.1 → XP_064861409.1  polypeptide N-acetylgalactosaminyltransferase 6-like isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases